{
  "_id": "6a16a78bacfb0bcc41d8335a",
  "Type": "Package",
  "Package": "ArchaeoPhases",
  "Title": "Post-Processing of Markov Chain Monte Carlo Simulations for\nChronological Modelling",
  "Version": "2.1.0",
  "Authors@R": "c(\nperson(\"Anne\", \"Philippe\", , \"anne.philippe@univ-nantes.fr\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-5331-5087\")),\nperson(\"Marie-Anne\", \"Vibet\", role = \"aut\",\ncomment = c(ORCID = \"0000-0003-4003-3141\")),\nperson(\"Nicolas\", \"Frerebeau\", , \"nicolas.frerebeau@u-bordeaux-montaigne.fr\", role = \"aut\",\ncomment = c(ORCID = \"0000-0001-5759-4944\")),\nperson(\"Thomas S.\", \"Dye\", role = \"ctb\",\ncomment = c(ORCID = \"0000-0001-8116-782X\")),\nperson(\"Nantes Université\", role = \"fnd\",\ncomment = c(ROR = \"03gnr7b55\")),\nperson(\"Université Bordeaux Montaigne\", role = \"fnd\",\ncomment = c(ROR = \"03pbgwk21\")),\nperson(\"CNRS\", role = \"fnd\",\ncomment = c(ROR = \"02feahw73\"))\n)",
  "Maintainer": "Anne Philippe <anne.philippe@univ-nantes.fr>",
  "Description": "Statistical analysis of archaeological dates and groups of\ndates. This package allows to post-process Markov Chain Monte\nCarlo (MCMC) simulations from 'ChronoModel'\n<https://chronomodel.com/>, 'Oxcal'\n<https://c14.arch.ox.ac.uk/oxcal.html> or 'BCal'\n<https://bcal.shef.ac.uk/>. It provides functions for the study\nof rhythms of the long term from the posterior distribution of\na series of dates (tempo and activity plot). It also allows the\nestimation and visualization of time ranges from the posterior\ndistribution of groups of dates (e.g. duration, transition and\nhiatus between successive phases) as described in Philippe and\nVibet (2020) <doi:10.18637/jss.v093.c01>.",
  "License": "GPL (>= 3)",
  "URL": "https://ArchaeoStat.github.io/ArchaeoPhases/,\nhttps://github.com/ArchaeoStat/ArchaeoPhases",
  "BugReports": "https://github.com/ArchaeoStat/ArchaeoPhases/issues",
  "VignetteBuilder": "knitr",
  "Additional_repositories": "https://archaeostat.r-universe.dev",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.3",
  "Collate": "'AllClasses.R' 'AllGenerics.R' 'ArchaeoPhases-defunct.R'\n'ArchaeoPhases-deprecated.R' 'ArchaeoPhases-internal.R'\n'ArchaeoPhases-package.R' 'activity.R' 'allen-mcmc.R'\n'allen-relations.R' 'bind.R' 'boundaries.R' 'coerce.R' 'data.R'\n'depth.R' 'duration.R' 'elapse.R' 'events.R' 'hiatus.R'\n'interpolate.R' 'interval.R' 'mutators.R' 'occurrence.R'\n'phases.R' 'plot.R' 'read.R' 'sensitivity.R' 'show.R' 'sort.R'\n'subset.R' 'summary.R' 'tempo.R' 'test.R' 'transition.R'\n'validate.R' 'zzz.R'",
  "Repository": "https://archaeostat.r-universe.dev",
  "Date/Publication": "2025-09-26 13:18:22 UTC",
  "RemoteUrl": "https://github.com/ArchaeoStat/ArchaeoPhases",
  "RemoteRef": "v2.1.0",
  "RemoteSha": "d573aed841ea0006d319a0c2c5fd2211ed993244",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-27 08:09:26 UTC",
    "User": "root"
  },
  "Author": "Anne Philippe [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-5331-5087>),\nMarie-Anne Vibet [aut] (ORCID: <https://orcid.org/0000-0003-4003-3141>),\nNicolas Frerebeau [aut] (ORCID:\n<https://orcid.org/0000-0001-5759-4944>),\nThomas S. Dye [ctb] (ORCID: <https://orcid.org/0000-0001-8116-782X>),\nNantes Université [fnd] (ROR: <https://ror.org/03gnr7b55>),\nUniversité Bordeaux Montaigne [fnd] (ROR: <https://ror.org/03pbgwk21>),\nCNRS [fnd] (ROR: <https://ror.org/02feahw73>)",
  "MD5sum": "a36185efc352c1b147da0a5de60e0f3f",
  "_user": "archaeostat",
  "_type": "src",
  "_file": "ArchaeoPhases_2.1.0.tar.gz",
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  "_filesize": 2377286,
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  "_created": "2026-05-27T08:09:26.000Z",
  "_published": "2026-05-27T08:12:59.320Z",
  "_distro": "noble",
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  "_buildurl": "https://github.com/r-universe/archaeostat/actions/runs/26498998960",
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  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/ArchaeoStat/ArchaeoPhases",
  "_commit": {
    "id": "d573aed841ea0006d319a0c2c5fd2211ed993244",
    "author": "philippe-a <anne.philippe@univ-nantes.fr>",
    "committer": "nfrerebeau <nicolas.frerebeau@u-bordeaux-montaigne.fr>",
    "message": "loess parameter\n\nadd new parameters in loess function\n",
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    "twitter": "@aj_phi",
    "description": "",
    "uuid": 10705808,
    "orcid": "0000-0002-5331-5087"
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  "_dependencies": [
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  "_owner": "archaeostat",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
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    }
  ],
  "_tags": [
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      "name": "v2.1.0",
      "date": "2025-09-26"
    }
  ],
  "_topics": [
    "markov-chain",
    "bayesian-statistics",
    "geochronology",
    "radiocarbon-dates",
    "archaeology",
    "archaeological-science"
  ],
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  "_devurl": "https://github.com/archaeostat/archaeophases",
  "_pkgdown": "https://ArchaeoStat.github.io/ArchaeoPhases/",
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  "_rbuild": "4.6.0",
  "_assets": [
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    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/archaeostat/archaeophases",
  "_realowner": "archaeostat",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0",
      "date": "2017-02-07"
    },
    {
      "version": "1.1",
      "date": "2017-03-27"
    },
    {
      "version": "1.2",
      "date": "2017-06-13"
    },
    {
      "version": "1.3",
      "date": "2017-09-28"
    },
    {
      "version": "1.4",
      "date": "2019-01-02"
    },
    {
      "version": "1.4.5",
      "date": "2020-05-29"
    },
    {
      "version": "1.5",
      "date": "2020-12-01"
    },
    {
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      "date": "2022-02-17"
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    {
      "version": "1.8",
      "date": "2022-06-21"
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    {
      "version": "2.0",
      "date": "2024-06-16"
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    {
      "version": "2.1.0",
      "date": "2025-09-26"
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  ],
  "_exports": [
    "activity",
    "AgeDepth",
    "allen_analyze",
    "allen_complement",
    "allen_composition",
    "allen_converse",
    "allen_illustrate",
    "allen_intersect",
    "allen_joint_concurrency",
    "allen_observe",
    "allen_observe_frequency",
    "allen_relation",
    "allen_relation_code",
    "allen_relation_concurrent",
    "allen_relation_distinct",
    "allen_relation_string",
    "allen_union",
    "as_coda",
    "as_events",
    "as_phases",
    "as.data.frame",
    "boundaries",
    "bury",
    "cbind2",
    "CreateMinMaxGroup",
    "credible_interval",
    "CredibleInterval",
    "dates_hiatus",
    "DatesHiatus",
    "duration",
    "elapse",
    "estimate_range",
    "hiatus",
    "interpolate",
    "interval_credible",
    "interval_hdr",
    "is_original",
    "marginal_plot",
    "marginal_statistics",
    "MarginalPlot",
    "MarginalProba",
    "MarginalStatistics",
    "multi_credible_interval",
    "multi_dates_plot",
    "multi_hpd",
    "multi_marginal_plot",
    "multi_marginal_statistics",
    "MultiCredibleInterval",
    "MultiDatesPlot",
    "MultiHPD",
    "MultiMarginalPlot",
    "MultiPhasePlot",
    "MultiPhasesGap",
    "MultiPhasesTransition",
    "MultiPhaseTimeRange",
    "MultiSuccessionPlot",
    "occurrence",
    "occurrence_plot",
    "OccurrencePlot",
    "older",
    "PhaseDurationPlot",
    "PhasePlot",
    "phases",
    "phases_gap",
    "PhasesGap",
    "PhaseStatistics",
    "PhasesTransition",
    "PhaseTimeRange",
    "plot",
    "predict",
    "read_bcal",
    "read_chronomodel_events",
    "read_chronomodel_phases",
    "read_oxcal",
    "sensitivity",
    "sort",
    "sort.list",
    "SuccessionPlot",
    "summary",
    "tempo",
    "tempo_activity_plot",
    "tempo_plot",
    "TempoActivityPlot",
    "TempoPlot",
    "transition",
    "undated_sample"
  ],
  "_datasets": [
    {
      "name": "mcmc_events",
      "title": "Events",
      "object": "mcmc_events",
      "class": [
        "data.frame"
      ],
      "fields": [
        "iter",
        "E1",
        "E2",
        "E3",
        "E4"
      ],
      "rows": 30000,
      "table": true,
      "tojson": true
    },
    {
      "name": "mcmc_phases",
      "title": "Phases",
      "object": "mcmc_phases",
      "class": [
        "data.frame"
      ],
      "fields": [
        "iter",
        "P2_alpha",
        "P2_beta",
        "P1_alpha",
        "P1_beta"
      ],
      "rows": 30000,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "activity",
      "title": "Activity Plot",
      "concept": [
        "event tools"
      ],
      "topics": [
        "activity",
        "activity,CumulativeEvents-method",
        "activity,EventsMCMC-method",
        "activity-method",
        "plot,ActivityEvents,missing-method"
      ]
    },
    {
      "page": "allen_analyze",
      "title": "Analyze Composite Allen Relations",
      "concept": [
        "Allen's intervals"
      ],
      "topics": [
        "allen_analyze"
      ]
    },
    {
      "page": "allen_complement",
      "title": "Complement of an Allen Relation",
      "concept": [
        "Allen's intervals"
      ],
      "topics": [
        "allen_complement",
        "allen_complement,character-method",
        "allen_complement,matrix-method",
        "allen_complement-method"
      ]
    },
    {
      "page": "allen_composition",
      "title": "Composition of Allen Relations",
      "concept": [
        "Allen's intervals"
      ],
      "topics": [
        "allen_composition",
        "allen_composition,character,character-method",
        "allen_composition-method"
      ]
    },
    {
      "page": "allen_converse",
      "title": "Converse of an Allen Relation",
      "concept": [
        "Allen's intervals"
      ],
      "topics": [
        "allen_converse",
        "allen_converse,character-method",
        "allen_converse,matrix-method",
        "allen_converse-method"
      ]
    },
    {
      "page": "allen_illustrate",
      "title": "Illustrate Basic and Composite Allen Relations",
      "concept": [
        "Allen's intervals"
      ],
      "topics": [
        "allen_illustrate"
      ]
    },
    {
      "page": "allen_intersect",
      "title": "Intersection of Allen Relations",
      "concept": [
        "Allen's intervals"
      ],
      "topics": [
        "allen_intersect",
        "allen_intersect,character,character-method",
        "allen_intersect-method"
      ]
    },
    {
      "page": "allen_joint_concurrency",
      "title": "Joint Concurrence of Two or More Observed Intervals",
      "concept": [
        "Allen's intervals"
      ],
      "topics": [
        "allen_joint_concurrency",
        "allen_joint_concurrency,EventsMCMC,list-method",
        "allen_joint_concurrency-method"
      ]
    },
    {
      "page": "allen_observe",
      "title": "Observe the Relation Between two Phases",
      "concept": [
        "Allen's intervals"
      ],
      "topics": [
        "allen_observe",
        "allen_observe,EventsMCMC,list-method",
        "allen_observe,PhasesMCMC,missing-method",
        "allen_observe-method"
      ]
    },
    {
      "page": "allen_observe_frequency",
      "title": "Observed Frequency of an Allen Set",
      "concept": [
        "Allen's intervals"
      ],
      "topics": [
        "allen_observe_frequency",
        "allen_observe_frequency,EventsMCMC,list-method",
        "allen_observe_frequency,PhasesMCMC,missing-method",
        "allen_observe_frequency-method"
      ]
    },
    {
      "page": "allen_relation",
      "title": "Allen Relation Between Definite Intervals",
      "concept": [
        "Allen's intervals"
      ],
      "topics": [
        "allen_relation",
        "allen_relation,ANY,missing-method",
        "allen_relation,numeric,numeric-method",
        "allen_relation-method"
      ]
    },
    {
      "page": "allen_relation_code",
      "title": "The Basic Allen Relation Set",
      "concept": [
        "Allen's intervals"
      ],
      "topics": [
        "allen_relation_code",
        "allen_relation_concurrent",
        "allen_relation_distinct",
        "allen_relation_string"
      ]
    },
    {
      "page": "allen_union",
      "title": "Union of Allen Relations",
      "concept": [
        "Allen's intervals"
      ],
      "topics": [
        "allen_union",
        "allen_union,character,character-method",
        "allen_union-method"
      ]
    },
    {
      "page": "as_coda",
      "title": "Coerce to Coda",
      "concept": [
        "read methods"
      ],
      "topics": [
        "as_coda",
        "as_coda,MCMC-method",
        "as_coda-method"
      ]
    },
    {
      "page": "as_events",
      "title": "Coerce to Events",
      "concept": [
        "read methods"
      ],
      "topics": [
        "as_events",
        "as_events,data.frame-method",
        "as_events,matrix-method",
        "as_events-method"
      ]
    },
    {
      "page": "as_phases",
      "title": "Coerce to Phases",
      "concept": [
        "read methods"
      ],
      "topics": [
        "as_phases",
        "as_phases,data.frame-method",
        "as_phases,matrix-method",
        "as_phases-method"
      ]
    },
    {
      "page": "bind",
      "title": "Combine two MCMC Objects",
      "concept": [
        "mutators"
      ],
      "topics": [
        "bind",
        "cbind2,MCMC,MCMC-method"
      ]
    },
    {
      "page": "boundaries",
      "title": "Phase Time Range",
      "concept": [
        "time ranges"
      ],
      "topics": [
        "boundaries",
        "boundaries,numeric,numeric-method",
        "boundaries,PhasesMCMC,missing-method",
        "boundaries-method"
      ]
    },
    {
      "page": "bury",
      "title": "Age-Depth Modeling",
      "concept": [
        "age-depth modeling tools"
      ],
      "topics": [
        "bury",
        "bury,AgeDepthModel-method",
        "bury,EventsMCMC,numeric-method",
        "bury,EventsMCMC-method",
        "bury-method",
        "plot,AgeDepthModel,missing-method",
        "predict,AgeDepthModel-method"
      ]
    },
    {
      "page": "check",
      "title": "Check for an Original MCMC File",
      "concept": [
        "read methods"
      ],
      "topics": [
        "check",
        "is_original",
        "is_original,ActivityEvents-method",
        "is_original,CumulativeEvents-method",
        "is_original,MCMC-method",
        "is_original,OccurrenceEvents-method",
        "is_original,PhasesMCMC-method",
        "is_original-method"
      ]
    },
    {
      "page": "data.frame",
      "title": "Coerce to a Data Frame",
      "concept": [
        "mutators"
      ],
      "topics": [
        "as.data.frame,ActivityEvents-method",
        "as.data.frame,CumulativeEvents-method",
        "as.data.frame,OccurrenceEvents-method",
        "as.data.frame,TimeRange-method",
        "data.frame"
      ]
    },
    {
      "page": "duration",
      "title": "Phase Duration",
      "concept": [
        "phase tools"
      ],
      "topics": [
        "duration",
        "duration,numeric,numeric-method",
        "duration,PhasesMCMC,missing-method",
        "duration-method"
      ]
    },
    {
      "page": "elapse",
      "title": "Elapsed Time Scale",
      "concept": [
        "event tools"
      ],
      "topics": [
        "elapse",
        "elapse,MCMC-method",
        "elapse-method"
      ]
    },
    {
      "page": "hiatus",
      "title": "Hiatus Between Two Dates",
      "concept": [
        "time ranges"
      ],
      "topics": [
        "hiatus",
        "hiatus,EventsMCMC,missing-method",
        "hiatus,EventsMCMC-method",
        "hiatus,numeric,numeric-method",
        "hiatus,PhasesMCMC,missing-method",
        "hiatus-method"
      ]
    },
    {
      "page": "interpolate",
      "title": "Interpolate Between Two Dates",
      "concept": [
        "age-depth modeling tools"
      ],
      "topics": [
        "interpolate",
        "interpolate,EventsMCMC,missing-method",
        "interpolate,numeric,numeric-method",
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